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Indices of possum abundance and browse at forest sites in New Zealand
Data associated with paper: Holland, E. P., Gormley, A. M. and Pech, R. P. (2016), Species- and site-specific impacts of an invasive herbivore on tree survival in mixed forests.... -
Black swan egg harvest experiment data
Data on black swan egg-laying rates, egg hatching probability, and overall nest hatching success associated with different customary egg harvest regimes implemented at Te... -
Multiple capture trap data
Data and spatial model for assessing effectiveness of using multiple and single capture traps. The data support an article in PLoS ONE: Warburton, B., & Gormley, A. M.... -
Dataset from "Comparing diversity of fungi from living leaves using culturing...
Supplementary data from Mycologia 109: 643-654, 2017 (DOI 10.1080/00275514.2017.1384712), together with additional unpublished data from Fuscopora truncata leaves from the Hunua... -
Optimising survey effort to monitor environmental variables
A new statistical power analysis R package simr informs environmental monitoring design within New Zealand's main kiwifruit growing region (Bay of Plenty). The pilot data for 13... -
Ecological requirements of NZ birds
Resource requirements (feeding and nesting) for selected New Zealand bird species and the spatial availability of these resources based on New Zealand LCDB3 cover classes -
Ancient and modern scats record broken ecological interactions and a decline ...
Supporting data for Boast et al. 2023 “Ancient and modern scats record broken ecological interactions and a decline in dietary breadth of the critically endangered kākāpo parrot... -
Surveillance effort and cost to prevent an incursion and Batrachochytrium sal...
Salamander importation data into the U.S., and Python scripts for analysing data and conducting a simulation experiment. Used in paper submitted to 'EcoHealth.' -
Livestock as sentinels for wildlife disease
Pseudo-code for a model written in Python that uses livestock disease surveillance data to make inference on the disease status of sympatric or adjacent living wildlife. -
Rodent review datasets
This dataset contains the databases (csv format) on the population and spatial ecology of ship rats (Rattus rattus), Norway rats (Rattus norvegicus), and house mice (Mus... -
Bio-economic optimisation of surveillance to confirm broadscale eradications ...
Python computer code for a 2-stage bio-economic model to identify optimal cost-efficient surveillance strategies for assessing progress and ultimately declaring success of... -
Template for mapping wetlands under the NPS Freshwater Management 2020
The attached GDB has a layer that is designed to open in ArcGIS Pro, as it offers multi-choice functionality. See the Bartlam and Burge (2024) report for a full explanation, and... -
Penicillium literature review Appendix 1
A spreadsheet listing all 487 accepted Penicillium species, their occurrence in New Zealand (based on NZFungi2 data), notes of their lifestyle, and diagnostic DNA sequences.... -
List of New Zealand tree species used by McGlone et al. (2010).
McGlone et al. (2010) define ‘trees’ as self-supporting, woody species that attain heights ≥6 m high. This definition includes 215 species indigenous to New Zealand, which are... -
Mycorrhizal communities of Lophomyrtus bullata
Fungal ITS and 18S metabarcoding data associated with Lophomyrtus bullata, and associated code used to process and analyse the data. This relates to the paper The mycorrhizal... -
Land use impacts on soil invertebrate biodiversity
Soil invertebrates COI DNA metabarcoding data, analysis code, and outputs, relating to the paper Andrew Dopheide, Andreas Makiola, Kate H. Orwin, Robert J. Holdaway, Jamie R.... -
Ashley Dene lysimeter experiment 1
Processed DNA metabarcoding data and analysis code from an experiment to investigate temporal effects of labile carbon inputs on bacterial and fungal biodiversity in urine... -
Computational reproducibility within the New Zealand Journal of Ecology
R code to reproduce the figures used in: Etherington TR, Brock JMP, Perry GLW, Wyse SV (2021) Implementing the Transparency and Openness Promotion (TOP) Guidelines for data and... -
Climatic limits of temperate rainforest tree species
This project contains the data files and R script supporting the paper: Laughlin DC, Delzon S, Clearwater MJ, Bellingham PJ, McGlone MS, Richardson SJ 2020. Climatic limits of... -
Lachnaceae in New Zealand - Aotearoa
A brief informal outline of the diversity of Lachnaceae (Leotiomycetes, Helotiales) known for New Zealand, based on PDD and ICMP specimens with DNA sequences. The phylogenetic...