Ashley Dene lysimeter experiment 1

Processed DNA metabarcoding data and analysis code from an experiment to investigate temporal effects of labile carbon inputs on bacterial and fungal biodiversity in urine patches, relating to the paper Labile carbon inputs support the recovery of prokaryotic communities, but not fungal communities, from a simulated bovine urine event, by Andrew Dopheide, Carina Davis, Steve A. Wakelin, David Whitehead, and Gwen-Aëlle Grelet

Data and Resources

L1_Bact_Fungi_analysis_ASVs_clean.RR
R code used to analyse temporal effects of urine and labile carbon inputs on...
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16S_zotutab_456.txtTXT
Prokaryote ASV abundances per sample.
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16S_zotus_rdp_tidy_456.txtTXT
Taxonomic identifications for prokaryote ASVs.
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ITS_zotutab_456.txtTXT
Fungal ITS ASV abundances per sample.
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ITS_zotus_rdp_tidy_456.txtTXT
Taxonomic identifications for fungal ITS ASVs.
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metadata_clean.txtTXT
Sample metadata attributes.
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path_abun_unstrat.tsvTSV
Prokaryote community metabolic pathway abundances output from PICRUSt2.
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L1_pipeline_2021.shbash
Code used to process the raw DNA metabarcoding data into ASVs.
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Additional Info

Field	Value
Publisher	Landcare Research NZ Ltd
Publication Year	2022
Authors	Dopheide, Andrew Davis, Carina Wakelin, Steve A. Whitehead, David Grelet, Gwen-Aëlle
Maintainer	Andrew Dopheide
DOI	https://doi.org/10.7931/zs7y-1w22