Leotiomycetes phylogeny 2019
Data and Resources
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update notes.txtTXT
Miscellaneous updates, mistakes in DNA sequences, etc
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Phylogenies Figs 1-6PDF
pdf version of the Bayesian genome tree and the 5 ML trees based on the 15...
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15-gene tree specimen metadataPDF
Specimen metadata for the genome tree (presented as Fig 1) and the 15-gene...
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ITS gene tree presented as Suppl. Data Fig 2PDF
pdf version of the ITS tree presented as Suppl Data Fig 2
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ITS gene tree specimen metadataPDF
Specimen metadata (Suppl Data Table 2) for ITS gene tree presented as Suppl...
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15 gene tree (Figs 1-6) NEXUS filenex
Nexus format file for the phylogeny presented as Figs 2-6.
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15-gene tree concatenated alignment fasta formatTXT
Concatenated alignment used to generate the 15-gene phylogeny, presented as...
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Partitions for 15 gene tree concatenated alignmentnexus
Partitions for the 15 genes in the concatenated alignment used for trees in...
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ITS gene tree (Suppl Data Fig 2) NEXUS filenexus
NEXUS file of the ITS gene tree presented as Suppl Data Fig 2. Maximum...
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ITS gene tree Alignment FASTA formatTXT
Alignment of the 568 ITS sequences used to generate the ITS gene tree Suppl....
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15-gene tree, 5.8S alignment FASTA formatTXT
5.8S alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, a-Tubulin alignment FASTA formatTXT
a-Tubulin alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, beta-Tubulin alignment FASTA formatTXT
beta-Tubulin alignment used in the concatenated alignment for the 15-gene...
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15-gene tree, LSU alignment FASTA formatTXT
LSU alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, MCM7 alignment FASTA formatTXT
MCM7 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, mtSSU alignment FASTA formatTXT
mtSSU alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, RPA1 alignment FASTA formatTXT
RPA1 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, RPA2 alignment FASTA formatTXT
RPA2 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, RPB1 alignment FASTA formatTXT
RPB1 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, RPB2 alignment FASTA formatTXT
RPB2 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, RPC2 alignment FASTA formatTXT
RPC2 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, SF3B1 alignment FASTA formatTXT
SF3B1 alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, SSU alignment FASTA formatTXT
SSU alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, TEF alignment FASTA formatTXT
TEF alignment used in the concatenated alignment for the 15-gene phylogeny
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15-gene tree, TFB4 alignment FASTA formatTXT
TFB4 alignment used in the concatenated alignment for the 15-gene phylogeny
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Models for genes in 15 gene phylogenyPDF
Genes included in the 15 gene phylogeny and models selected by ModelFinder
Additional Info
| Field | Value |
|---|---|
| Publisher | Landcare Research NZ Ltd |
| Publication Year | 2019 |
| Authors |
|
| Maintainer | Peter Johnston |
| Start Date | 2018-08 |
| DOI | https://doi.org/10.7931/T5YV-BE95 |