Ashley Dene deep soil cores

Processed DNA metabarcoding data and analysis code from Ashley Dene deep soil cores analysis project, relating to the manuscript: Depth-structuring of multi-kingdom soil communities in agricultural pastures (2021), by Andrew Dopheide, Carina Davis, Jonathan Nuñez, Graeme Rogers, David Whitehead, and Gwen-Aëlle Grelet.

Data and Resources

Bact_tax_clean_D9.txtTXT
Prokaryote ASV taxonomy table
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Fungi_tax_clean_D9.txtTXT
Fungal ASV taxonomy table
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Nematode_tax_clean_lim_D9.txtTXT
Nematode ASV taxonomy table
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Protist_tax_clean_lim_D9.txtTXT
Protist ASV taxonomy table
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Bact_zotutab_clean_D9.txtTXT
Prokaryote ASV abundance table
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Fungi_zotutab_clean_D9.txtTXT
Fungal ASV abundance table
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Nematode_zotutab_clean_lim_D9.txtTXT
Nematode ASV abundance table
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Protist_zotutab_clean_lim_D9.txtTXT
Protist ASV abundance table
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metadata_D9.txtTXT
Sample metadata
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Deep_cores_analysis_code_ASVs.R
R code used to analyse multi-kingdom biodiversity and community structure...
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SpiecEasi_network_inference_v2.R
R code used to generate multi-kingdom co-occurrence networks
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Network_data.zipTXT
Multi-kingdom co-occurrence network data, consisting of filtered ASV...
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Additional Info

Field	Value
Publisher	Landcare Research NZ Ltd
Publication Year	2021
Authors	Dopheide, Andrew Davis, Carina Nuñez, Jonathan Rogers, Graeme Whitehead, David Grelet, Gwen-Aëlle
Maintainer	Andrew Dopheide
DOI	https://doi.org/10.7931/f94j-wn07