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Optimising survey effort to monitor environmental variables
A new statistical power analysis R package simr informs environmental monitoring design within New Zealand's main kiwifruit growing region (Bay of Plenty). The pilot data for 13... -
Code: Modelling habituation of introduced predators
Python computer code for the individual based model simulating olfactory habituation of introduced mammalian predators to unrewarding bird odours in New Zealand. Associated... -
Surveillance effort and cost to prevent an incursion and Batrachochytrium sal...
Salamander importation data into the U.S., and Python scripts for analysing data and conducting a simulation experiment. Used in paper submitted to 'EcoHealth.' -
Helotiales on Elaeocarpus leaves
Summary of the species of Helotiales (Leotiomycetes, the inoperculate discomycetes) found on Elaeocarpus leaves in New Zealand, together with an identification key, brief... -
Lachnaceae in New Zealand - Aotearoa
A brief informal outline of the diversity of Lachnaceae (Leotiomycetes, Helotiales) known for New Zealand, based on PDD and ICMP specimens with DNA sequences. The phylogenetic... -
New Rhizodiscina and saprobic Sclerococcum species from Aotearoa New Zealand
Descriptions of a set of Rhizodiscina and Sclerococcum spp. formally named in Index Fungorum no. 519, 2022... -
Hyphodiscaceae in Aotearoa New Zealand
ITS gene tree showing diversity of unnamed Leotiomycetes species within Hyphodiscaeae in New Zealand -
Chlorosplenium in New Zealand and Australia
Descriptive note on three unnamed Chlorosplenium species, two from New Zealand and one from Australia. -
Land use impacts on soil invertebrate biodiversity
Soil invertebrates COI DNA metabarcoding data, analysis code, and outputs, relating to the paper Andrew Dopheide, Andreas Makiola, Kate H. Orwin, Robert J. Holdaway, Jamie R.... -
Code for A History of Open Temperature and Rainfall with Uncertainty in New Z...
Python code used to process data in the production of A History of Open Weather in New Zealand (HOWNZ): an open access 1 km resolution monthly 1910-2019 time-series of... -
Binary space partitioning neutral landscape models code
Python and NetLogo code used to create binary space partitioning neutral landscape models in support of the paper: Etherington TR, Morgan FJ, O’Sullivan D. Binary space... -
Bio-economic optimisation of surveillance to confirm broadscale eradications ...
Python computer code for a 2-stage bio-economic model to identify optimal cost-efficient surveillance strategies for assessing progress and ultimately declaring success of... -
Inferential and forward projection modelling to evaluate options for controll...
Data for analysis of stoat eradication from Resolution Island, New Zealand. Included is an Excel spreadsheet for calculating the net present value of alternative management... -
Leotiomycetes phylogeny updated October 2022
This unpublished phylogeny is based on the same set of genes used by Johnston et al. (2019) and uses the same methods. The 2019 dataset has been expanded to include additional... -
Calloriaceae sensu Baral in Jaklitsch 2019
Some notes of Calloriaceae sensu Baral (in Jaklitsch et al., 2019, Syllabus of Plant families, Ascomycota) -
Erioscyphella in New Zealand
Phylogenies and summary of diversity of Erioscyphella (Leotiomycetes, Helotiales, Lachnaceae) in New Zealand -
Sarcosoma orientale in New Zealand
A phylogeny based on ITS and LSU sequences suggests a New Zealand specimen morphologically typical of Sarcosoma orientale is phylogenetically distinct from the types of the... -
Austropezia in Pezizellaceae s.l.
Phylogeny showing Austropezia and related unnamed species from New Zealand belong in Han et al. (2014) Clade 3, part of Pezizellaceae sensu lato. -
Chlorovibrissea sensu Sandoval-Leiva et al. 2014 is polyphyletic
Some notes and an ITS-based phylogeny that includes recently available sequences suggesting Chlorovibrissea sensu Sandoval-Leiva et al. 2014 is polyphyletic. -
Phaeohelotium phylogeny and notes
ITS based phylogeny of New Zealand taxa that appear to be congeneric with the type of Phaeohelotium.