treefile = RAxML_bestTree.result
#treefile = RAxML_bootstrap.result
numsites = 90492
nthreads = 4
thorough
log_pen

#mrca = OLDNORF S26 S45 
#min = OLDNORF 55
#max = OLDNORF 85
mrca = ASP S11 S12 S2 S25 S26 S27 S29 S31 S33 S34 S39 S40 S41 S42 S45 S49 S5 S50 S52 S53 S54 S55 S6 S9 KX790363 KY085913 LN896356 KX822778 KX519714 KX931467 KX931468 Dianella KX822774
max = ASP 145
min = ASP 125
mrca = Asph Dianella S11 S12 S2 S25 S26 S27 S29 S31 S33 S34 S39 S40 S41 S42 S45 S49 S5 S50 S52 S53 S54 S55 S6 S9
max = Asph 55
min = Asph 38

#prime

[Best optimisation parameters]
opt = 1
moredetail
optad = 1
moredetailad
optcvad = 5

#randomcv
#cviter = 5
#cvsimaniter = 1000000000
#cvstart = 0.000001
#cvstop = 0.000000000000001
#cvmultstep = 0.1
#cvoutfile = PhormiumCV.txt

[Best smoothing value]
smooth = 0.00000001

[Output file of dating step]
outfile = PhormiumFeb21